Documentation BMS 2.0
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BioCASe Monitor 2.0 Administrator Manual
thomas.pfuhl@mfn-berlin.de, Oct 2015, last updated April 2016
User Registration, Authentication & Rights:
- every administrator needs to be registered: username, password, full name, email address
- the administrator's rights are individually set for each provider : crud (create, read, update, delete)
- no access: ----
- read only: -r--
- read+update: -ru-
- crud : crud
Typical Workflow
- login
- select Provider
- edit the Provider's Main Metadata
- edit Data Sources and Data Sets
- edit Useful Links
- logout
Login
- login
- type in username and password
- select provider
Main Metadata
- edit the provider's Main Metadata
Count Concepts
- example: /DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/FileURI
- modify a concept: autocompletion from all concepts defined in ABCD2
-
sort: move a concept up and down, using the handle
-
save
-
add
-
delete
Data Source Access Points (DSAs)
- Data Sources are presented in tabs: a tab for each data source, one data source visible
- operations: add, delete, save
- edit required fields
- status: active/inactive
- data-source: select select a specific Data Source in the dropdown list
- title: type a human readable full title
- data-set: select a specific Data Set in the dropdown list
- landing-page: select type of landingpge:
- automatically generated: this is the default landingpage, based on a scan request for the concept /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/FileURI.
- user-defined URL: enter an URL
- for advanced users only:
- filter is applied as is (not validated) to the request sent to the pywrapper
Useful Links
- add an arbitrary list of links
- a link is a fqdn (full qualified domain name) and should be one of the following types:
- BioCASe Query Tool
- BioCASe Archive
- GBIF
- Europaeana
- Deutsche Digitale Bibliothek
- GeoCASe
- BiNHum
- Pangaea
- GFBio
- example: http://www.gbif.org/dataset/71f03224-f762-11e1-a439-00145eb45e9a (GBIF)
- special case: BioCASe Archive
- recommendation: BioCASe Archives should always be provided and placed first. In the case of multiple Archives, one of them can be marked as "latest".
- remark: please note that an URL for a BioCASe Archive is arbitrary, i.e. it need not to be hosted on the biowikifarm.
- a link is a fqdn (full qualified domain name) and should be one of the following types:
Logout
Webservices
output: JSON
Direct Call
You have to supply some of the following GET-Parameters: provider (provider ID), name (provider Name), dsa (Data Source Access Point), url (pywrapper)
- http://bms.gfbio.org/services/providers/ (gets Providers)
- http://bms.gfbio.org/services/providers/?provider=1
- http://bms.gfbio.org/services/providers/?name=SNSB
- http://bms.gfbio.org/services/data-sources/ (gets DSA Points)
- http://bms.gfbio.org/services/data-sources/?provider=1
- http://bms.gfbio.org/services/useful-links/?provider=1 (gets Useful Links)
- http://bms.gfbio.org/services/useful-links/?provider=1&dsa=1
- http://bms.gfbio.org/services/xml-archives/?provider=1 (gets XML Archives)
- http://bms.gfbio.org/services/capabilities/?localId=0&url=http%3A%2F%2Fww3.bgbm.org%2Fbiocase%2Fpywrapper.cgi%3Fdsa%3DHerbar (gets Capabilities, localId is a dummy value)
GUI
BioDiversity catalogue
These Webservices are registered in the BioDiversity Catalogue: https://www.biodiversitycatalogue.org/services/101